I assume you're talking about worksheet's autofilter and not a table filter...
var wb = new XLWorkbook();
var ws = wb.AddWorksheet("Sheet1");
ws.FirstCell().SetValue("A")
.CellBelow().SetValue(1)
.CellBelow().SetValue(2);
ws.RangeUsed().SetAutoFilter().Column(1).EqualTo(1);
ws.AutoFilter.Column(1).Clear(); // Clear the filter for a column
ws.AutoFilter.Clear(); // Remove the autofilter from the worksheet